Journal Papers

Kashiwabara, André Yoshiaki; Bonadio, Ígor; Onuchic, Vitor; Amado, Felipe; Mathias, Rafael; Durham, Alan Mitchell. ToPS: A Framework to Manipulate Probabilistic Models of Sequence Data. PLOS Computational Biology (Online), v. 9, p. e1003234, 2013.

Proceedings Papers

Ferreira, Renato Cordeiro; Bonadio, Ígor; Durham, Alan Mitchell. Secretary Pattern: Decreasing Coupling while Keeping Reusability. Proceedings of the 11th Latin-American Conference on Pattern Languages of Programming (SugarLoafPLoP '16), 2016.

Thesis

Bonadio, Ígor. Desenvolvimento de um arcabouço probabilístico para implementação de campos aleatórios condicionais. Master Thesis - Department of Computer Science, University of São Paulo, March, 2013.